chemart / michaelis-menten

View on GitHub

Michaelis-Menten enzyme kinetics — The canonical enzyme mechanism, and a lesson about output formats. Written elementarily it is three mass-action reactions among four species: enzyme and substrate bind reversibly, then the complex releases product. Elimi…

files / preview.json · 764 B · at 2baab0a932ac Raw
{"species": [{"id": "E", "structure": null}, {"id": "S", "structure": null}, {"id": "ES", "structure": null}, {"id": "P", "structure": null}], "reactions": [{"reactants": {"E": 1, "S": 1}, "products": {"ES": 1}, "rate": {"law": "mass-action", "k": 1.0}, "count": null}, {"reactants": {"ES": 1}, "products": {"E": 1, "S": 1}, "rate": {"law": "mass-action", "k": 1.0}, "count": null}, {"reactants": {"ES": 1}, "products": {"E": 1, "P": 1}, "rate": {"law": "mass-action", "k": 1.0}, "count": null}], "status": "complete", "initial_state": {"E": 1.0, "S": 10.0, "ES": 0.0, "P": 0.0}, "inflow": null, "outflow": null, "extras": {}, "chemistry": "michaelis-menten", "params": {"form": "elementary", "ka": 1.0, "ka_rev": 1.0, "kb": 1.0, "E0": 1.0, "S0": 10.0}, "seed": 1}