chemart / repressilator

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Repressilator — A synthetic oscillator that was actually built in bacteria. Three genes are arranged in a cycle so each represses the next, with repression modelled as cooperative binding and both mRNA and protein decaying. With enough …

chemistry official · built in wet fidelity: book #banzhaf-yamamoto

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Repressilator

One of the artificial chemistries of Banzhaf & Yamamoto, Artificial Chemistries (MIT Press, 2015), §19.3.2; appendix (Repressilator.py); first proposed by Elowitz & Leibler, 2000.

Its generator ships with the chemart library, so loading it runs no code from the hub and needs no trust_remote_code.

import chemart

net = chemart.generate_network("chemart/repressilator", seed=0)   # same as "repressilator"
print(net.summary())