chemart / rna-folding-ac
View on GitHubRNA-folding ribozyme artificial chemistry — The most physically real chemistry in the catalog. Molecules are RNA sequences, and each one is folded by actual free-energy minimisation into a secondary structure; the structure's largest loop is then read as the react…
chemistry
official · built in
systems-biology
fidelity: reconstructed
constructive
#banzhaf-yamamoto
RNA-folding ribozyme artificial chemistry
One of the artificial chemistries of Banzhaf & Yamamoto, Artificial Chemistries (MIT Press, 2015), §18.1.1; first proposed by Ullrich & Flamm, 2008.
Its generator ships with the chemart library, so loading it runs no code from the hub and needs no trust_remote_code.
import chemart
net = chemart.generate_network("chemart/rna-folding-ac", seed=0) # same as "rna-folding-ac"
print(net.summary())