chemart / tominaga-stacked-strings
View on GitHubTominaga's stackable-string chemistry — A notation designed to make molecular biology expressible. A molecule is a stack of lines of elements, each line displaced horizontally relative to the first - so a double strand, a sticky end, or a polymerase sitting on…
chemistry
official · built in
systems-biology
fidelity: reconstructed
constructive
#banzhaf-yamamoto
Tominaga's stackable-string chemistry
One of the artificial chemistries of Banzhaf & Yamamoto, Artificial Chemistries (MIT Press, 2015), §18.3.2; first proposed by Tominaga et al., 2004-2009.
Its generator ships with the chemart library, so loading it runs no code from the hub and needs no trust_remote_code.
import chemart
net = chemart.generate_network("chemart/tominaga-stacked-strings", seed=0) # same as "tominaga-stacked-strings"
print(net.summary())